PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00025236-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 693aa    MW: 80586 Da    PI: 6.5467
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00025236-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.61.8e-2268159190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleH 85 
                            ++Y ++A++ GFs+rk++s+ s + g ++kr+fvC+++g++ ++kk++ +++r+r++ r+gC+ak+ ++ke    d +w v ++++ H
  SMil_00025236-RA_Salv  68 EYYGSFARKNGFSIRKERSRLSPQLG-VYKRDFVCYRSGFAPPRKKQAGEHQRERKSVRCGCDAKMYLSKEVvdgDFQWFVVQFSNVH 154
                            59********************8888.*******************************************99877779********** PP

                   FAR1  86 nHela 90 
                            nHel 
  SMil_00025236-RA_Salv 155 NHELL 159
                            ***96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-2068159IPR004330FAR1 DNA binding domain
PfamPF105516.9E-20291382IPR018289MULE transposase domain
PROSITE profilePS5096610.089563598IPR007527Zinc finger, SWIM-type
PfamPF044346.6E-8570597IPR007527Zinc finger, SWIM-type
SMARTSM005751.9E-5573600IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MVSLQSKSVW MKRQQCPCGD WKCFVTYEGN TDEGSVVSQL IKNDLGPNET MVAPYVGMVF  60
KSDDEAFEYY GSFARKNGFS IRKERSRLSP QLGVYKRDFV CYRSGFAPPR KKQAGEHQRE  120
RKSVRCGCDA KMYLSKEVVD GDFQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP INRIVKVLEL EKGIQGGQLS FLERDVRNFI QNRKKAVQEN DALLTEKREN  240
DTMDLLEACR ANKEADPFFV YDVAVDENDK VENVAWSFGD SIHAYNMFGD VVYFDSTFSS  300
MVYGMLFGAW LGIDNHGKVL FFGCALMQDE TPQSFAWSLQ AFLRFMKGRY PQTIITDIDT  360
GLREAIRSEM PNTKHVISLY NILPRMSCWF SLPLGPRFSQ FKYEFEELCH LETTDEFEFR  420
WNQMVSHFEL NSDKHIVLLF SLRMCWALPY IRGCFLARMD SSSYWKSLDV ILKEVIKTQT  480
CLRGLLEQTG LSSNYRMKSH DQTQYMHLKT CLPIEEHARN VLTPFAFDHT QHEMVLSLQY  540
AASEMANGSY LVHHFKKVDG ERLVIWIPED EQIHCSCKEF ESTGILCRHA LRVLLFKNYF  600
QLPSKYLLNR WRQESSLFCY SGESNIKMKD EWYQEFHSLT GTLFSEAMLT KERSDFVHRE  660
LTKELTRLTS QVRDMPAGDE GVTDVTLSPT NAL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095923.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A022QJC30.0A0A022QJC3_ERYGU; Uncharacterized protein
STRINGVIT_00s0194g00200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75321927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10